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Table 3 Running times of PIntron and Exogean on the 26 "critical" genes

From: PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text

Gene Genomic
length (nt)
Number of
transcripts
Running time (seconds)
    PIntron Exogean
ACTB 36,634 26,248 287.35 371.22
ALB 24,299 16,920 144.17 369.38
ANKS1B 1,258,645 406 15.60 0.92
ANXA1 512,535 2,087 20.65 7.63
ATP1A1 619,226 3,241 27.82 11.90
ATP5A1 405,213 9,864 143.33 70.93
CDH13 1,169,823 507 10.34 1.02
CNTNAP2 2,304,964 227 30.86 1.01
CTNNA2 1,463,710 261 12.71 0.96
CUGBP2 1,081,163 864 18.04 2.42
DAB1 1,551,956 164 14.51 0.85
DLG2 2,172,263 279 21.18 1.15
DMD 2,241,933 329 35.35 2.21
ENO1 185,661 13,131 119.84 125.51
FGG 579,042 2,033 15.40 3.56
FHIT () 1,502,110 134 202.35 n.a.
GAPDH 46,975 15,518 149.64 232.81
HINT1 873,331 844 12.02 3.08
HSP90AA1 384,611 6,710 47.37 13.87
HSPA8 90,642 15,850 118.47 152.84
KCNIP4 1,220,613 107 10.09 0.65
MBP 154,857 21,071 251.70 1,344.42
NCAM1 317,404 1,293 12.54 1.63
RPL3 187,677 12,208 90.15 108.12
TBC1D22A 1,378,585 467 115.99 2.27
TTN 304,814 1,349 1,952.58 6.77
Total 22,068,686 152,112 3,880.05 2,837.94
  1. Exogean did not successfully compute a gene structure for FHIT.