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Table 3 Assembly performance on the human genome

From: Exploiting sparseness in de novo genome assembly

 

k= 31

k= 63

k= 127

k= 31

k= 63

k= 127

 

Error free data

1% error rate

Memory peak (GB)

14

16

19

30

49

51

> 100 bp (# k contigs )

3,195

1,984

714

2,727

1,554

1,359

   Sum (G bp)

2.37

2.79

2.83

2.29

2.72

2.88

Mean size (bp)

743

1,406

3,961

839

1,751

2,121

N50 (bp)

2,130

6,479

79,906

2,121

6,319

49,572

N90 (bp)

244

631

10,441

304

872

1,021

Longest contig (bp)

50,800

124,293

801,692

47164

124,292

537,017

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BMC Bioinformatics

ISSN: 1471-2105

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