Table 4 Assembly performance on the E.coli genome (ERR022075)
(k= 51) | ABySS | Velvet | SparseAssembler |
|---|---|---|---|
Time (hr) | 2 | 1 | 0.7 |
Memory peak (GB) | 3.5 | 9.1 | 0.7 |
> 100 bp (# contigs) | 430 | 632 | 485 |
Sum (bp) | 4,556,772 | 4,413,080 | 4,577,604 |
Mean size (bp) | 10,597 | 6,983 | 9,438 |
N50 (bp) | 57,655 | 19,067 | 57,830 |
N95 (bp) | 5,629 | 128 | 5,906 |
Corr NG50 (bp) | 57,655 | 19,067 | 57,828 |
Corr NG95 (bp) | 5,629 | 125 | 5,676 |
Longest contig (bp) | 166,107 | 120,922 | 173,976 |
Coverage (%) | 99.90 | 96.53 | 99.94 |
Misjoins | 1 | 1 | 2 |