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Table 4 Assembly performance on the E.coli genome (ERR022075)

From: Exploiting sparseness in de novo genome assembly

(k= 51) ABySS Velvet SparseAssembler
Time (hr) 2 1 0.7
Memory peak (GB) 3.5 9.1 0.7
> 100 bp (# contigs) 430 632 485
Sum (bp) 4,556,772 4,413,080 4,577,604
Mean size (bp) 10,597 6,983 9,438
N50 (bp) 57,655 19,067 57,830
N95 (bp) 5,629 128 5,906
Corr NG50 (bp) 57,655 19,067 57,828
Corr NG95 (bp) 5,629 125 5,676
Longest contig (bp) 166,107 120,922 173,976
Coverage (%) 99.90 96.53 99.94
Misjoins 1 1 2