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Table 5 Assembly performance on the human chromosome 14

From: Exploiting sparseness in de novo genome assembly

(k= 53) ABySS Velvet SOAPdenovo SparseAssembler
Time (hr) 6 2.5 6. 1.9
Memory peak (GB) 49 37 30 3
> 100 bp (# contigs) 85,181 129,046 84,719 55,024
   Sum (kbp) 88,663 89,854 87,908 86,296
Mean size (bp) 1,041 696 1,038 1,568
N50 (bp) 3,568 1,499 3,117 3,890
N95 (bp) 179 184 197 202
Corr NG50 (bp) 3,475 1,487 3,065 3,760
Corr NG95 (bp) 175 178 192 198
Coverage (%) 98.54 98.86 98.42 97.56
Longest contig (bp) 61,018 16,043 49,584 60,797
Misjoins 24 62 47 61
  1. This dataset was downloaded from http://gage.cbcb.umd.edu/data/index.html, genome size: 88,289,540.