Skip to main content

Table 4 Comparison of SVseq2, SVseq1 and Pindel on running time.

From: An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data

Method

Max Event Size

SV Type

Time

SVseq2

None

DEL

1 m 48 s

 

None

INS

20 s

SVseq1

35, 000

DEL

8 m 40 s

 

1, 000, 000

DEL

82 m

Pindel

32, 368

DEL, INS, TD

7 m 40 s

 

517, 888

DEL, INS, TD

93 m

  1. DEL stands for deletion, INS for insertion and TD for Tandem repeat.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us