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Figure 4 | BMC Bioinformatics

Figure 4

From: ProDis-ContSHC: learning protein dissimilarity measures and hierarchical context coherently for protein-protein comparison in protein database retrieval

Figure 4

Efficient implementation of ProDis-ContSHC. (a) Performing ProDis-ContSHC on the original matrix of size (N + 1) × (N + 1) from the entire dataset; (b) Performing ProDis-ContSHC on a subset of the database proteins, i.e., a dissimilarity matrix of size (N' + 1) × (N' + 1); (c) Using the symmetry property of the dissimilarity matrix to reduce the training time.

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BMC Bioinformatics

ISSN: 1471-2105

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