Inferring robust gene networks from expression data by a sensitivity-based incremental evolution method

BMC Bioinformatics

Table 11 Critical gene regulatory relationships

Gene-id (i)	Gene name	Gene regulation	References
1	lexA	lexA -\| lexA (h_1,1), uvrA -\| lexA (h_1,2)	[11, 40, 43, 44]
2	uvrA	lexA→uvrA (g_2,1), recA→uvrA (g_2,4)	[43, 44]
3	uvrD	lexA -\| uvrD (h_3,1), uvrA -\| uvrD (h_3,2)	[11, 41, 43]
4	recA	uvrD→recA (g_4,3)	[43]
5	umuD	uvrA→umuD (g_5,2), recA -\| umuD (h_5,4)	[11, 43]
6	polB	uvrD→polB (g_6,3)	[44]

Summary of critical gene regulatory relationships obtained by the proposed framework with respect to the results in the literature. The parameters g_i,j and h_i,j are kinetic orders of the S-system.

ISSN: 1471-2105