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Table 2 Assessment on the GENIA and RLIMS-P corpora

From: Application of text-mining for updating protein post-translational modification annotation in UniProtKB

  Acetylation Glycosylation Methylation Phosphorylation
# events/documents 68 93 70 110
False negative 7 31 26 15
False positive 2 0 0 12
Recall 90% 66% 63% 86%
Precision 97% 100% 100% 89%
  1. #events is the number of acetylation, glycosylation or methylation events with site information on in the GENIA corpus, #documents is the number of abstracts positive for phosphorylation information in the RLIMP-P corpus.
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BMC Bioinformatics

ISSN: 1471-2105

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