Table 14 The effect on F-score when changing the ground truth of incorrectly annotated pairs with APG and SL kernels
From: A detailed error analysis of 13 kernel methods for protein-protein interaction extraction
AIMed | BioInfer | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Kernel | Original | Modified | Retrained | Δ m-o | Δ r-m | Original | Modified | Retrained | Δ m-o | Δ r-m |
APG (setting A) | 56.18 | 56.61 | 56.14 | 0.43 | −0.47 | 60.66 | 60.87 | 61.19 | 0.21 | 0.32 |
APG (setting B) | 55.29 | 55.73 | 56.72 | 0.44 | 0.99 | 60.61 | 60.83 | 60.94 | 0.22 | 0.11 |
APG (setting C) | 53.20 | 53.66 | 53.96 | 0.46 | 0.30 | 59.91 | 60.36 | 60.88 | 0.45 | 0.52 |
APG (setting D) | 52.30 | 52.77 | 52.99 | 0.47 | 0.22 | 59.42 | 59.90 | 60.20 | 0.48 | 0.30 |
APG (avg) | 54.24 | 54.69 | 54.95 | 0.45 | 0.26 | 60.15 | 60.60 | 60.80 | 0.34 | 0.31 |
SL | 54.48 | 55.06 | 55.57 | 0.58 | 0.51 | 59.99 | 60.46 | 60.71 | 0.47 | 0.25 |