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Table 1 Comparison of error rates and speed for GAII

From: Base calling for high-throughput short-read sequencing: dynamic programming solutions

Decoding strategy

Error rate

Running times

FB

0.0128

400mins

SOVA

0.0129

300mins

OnlineCall

0.0137

30mins

naiveBayesCall

0.0139

1500mins

Ibis

0.0147

480mins

Bustard

0.0154

40mins

Rolexa

0.0171

720mins

  1. A comparison of error rates and running times (per lane) for different base callers (note that Bustard’s running time is underestimated since it does not account for the parameter estimation step).
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BMC Bioinformatics

ISSN: 1471-2105

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