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Table 1 Relations used in the present formalisation

From: Eliciting candidate anatomical routes for protein interactions: a scenario from endocrine physiology

Symbol

Arguments

Reading

acc

[Subst, Subst]

Can access

att‐to

[Subst, Subst]

Is attached to

cap‐of

[CVS,CVS]

Capillary of

CIVSR

[Subst, Subst]

Can interact with,

  

via some route

CMTP t

[Subst, one of:

Can move through

 

Dif, Adv, Cnv]

path type

CONN

[Subst, Subst]

Is connected to

COMM3

[Subst, Subst, one of:

Type of communication

 

Dif, Adv, Cnv]

between

exp‐to

[Subst, Subst]

Is exposed to

fnd‐in

[Subst, Subst]

Is found in

fnd‐in‐postp

[Subst, Subst]

Is found in,

  

post‐production

from‐loc

[Translocation, Subst]

From location

int‐btw

[Subst, Subst,

Interaction between

 

Interaction]

 

occurs‐in

[Proc, Subst]

Occurs in

participates in

[Subst, Proc]

Participates in

postp t

[Subst, one of:

Type of post‐production

 

Ltcyt, Ltpm, Ltec]

site

prod‐by

[Subst, Subst]

Produced by

pm‐of

[PM, Subst]

Plasma membrane of

tf‐of

[FP, Subst]

Tissue fluid of

to‐loc

[Translocation, Subst]

To location

trans‐subtends‐int

[Translocation,

(translocation) subtends

 

Interaction]

(interaction)

tr‐obj

[Translocation, Subst]

Translocation’s object

ts‐of

[TS, Tissue]

Tissue structure of