Table 5 Comparison of the analysis results for three SNPs on chromosome 9 known to be associated with RA
From: Robust methods for population stratification in genome wide association studies
| Â | SNP rs2900180 | SNP rs1953126 | SNP rs881375 | |||
|---|---|---|---|---|---|---|
| Â | Â | Rank in | Â | Rank in | Â | Rank in |
| Â | Â | non-HLA | Â | non-HLA | Â | non-HLA |
| Â | p-Value | SNPs | p-Value | SNPs | p-Value | SNPs |
rPCA | 1.15E-07 | 1 | 2.78E-07 | 2 | 3.20E-07 | 3 |
PCA | 1.91E-07 | 1 | 4.71E-07 | 2 | 5.55E-07 | 3 |
MDS | 1.69E-07 | 1 | 4.55E-07 | 2 | 4.91E-07 | 3 |
Trend | 8.05E-09 | 4 | 3.52E-08 | 7 | 2.82E-08 | 6 |
GC | 1.46E-06 | 4 | 4.13E-06 | 7 | 3.54E-06 | 6 |