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Table 2 Overrepresentation of predicted TFBS in the GSE1692 data set

From: D-Light on promoters: a client-server system for the analysis and visualization of cis-regulatory elements

p-value

E2F1

NFYA

USF1

MYC::MAX

1∗10−3

1.08

1.02

0.98

0.99

5∗10−4

1.10

1.08

1.07

0.99

1∗10−4

1.41

1.34

1.26

1.15

5∗10−5

1.39

1.45

n/a

1.37

1∗10−5

n/a

n/a

n/a

1.71

  1. Ratios of predicted TBFSs per gene are shown for different p-value cutoffs and four different top ranking TFs. n/a indicates, that the cutoff is below the minimal reachable p-value for the respective PFM.
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BMC Bioinformatics

ISSN: 1471-2105

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