Table 1 The detection FPR/TPR with different single copy length l
From: CNV-TV: A robust method to discover copy number variation from short sequencing reads
l | CNV-seq | FREEC | SegSeq | CNV-TV1 | readDepth | CNVnator | EWT | CNV-TV2 |
|---|---|---|---|---|---|---|---|---|
1e3 | 4.7e-4/0.97 | 1.5e-3/1.00 | 6.7e-3/0.99 | 2.3e-3/0.97 | 4.5e-5/0.96 | 1.7e-6/0.07 | 2.3e-4/0.99 | 1.0e-4/0.97 |
2e3 | 4.5e-4/0.96 | 1.4e-3/1.00 | 5.0e-3/1.00 | 1.5e-3/0.98 | 6.5e-5/0.98 | 1.0e-4/0.96 | 3.0e-4/0.99 | 7.7e-5/0.98 |
6e3 | 3.5e-4/1.00 | 9.9e-4/1.00 | 4.9e-3/0.99 | 7.9e-4/0.99 | 3.1e-5/0.99 | 2.5e-5/0.99 | 1.3e-4/0.99 | 6.2e-5/0.99 |