BMC Bioinformatics

Table 4 F -scores of top 10 CNVs detected by each method from the sample NA19240

From: CNV-TV: A robust method to discover copy number variation from short sequencing reads

CNVs	1	2	3	4	5	6	7	8	9	10
CNV-seq	0.74	0.73	0.64	0.62	0.53	0.42	0.40	0.30	0.05	0.04
FREEC	0.88	0.83	0.65	0.64	0.63	0.63	0.53	0.53	0.48	0.43
readDepth	0.81	0.80	0.79	0.75	0.74	0.71	0.71	0.64	0.62	0.57
CNVnator	0.92	0.90	0.88	0.84	0.82	0.82	0.79	0.78	0.77	0.73
SegSeq	0.93	0.91	0.89	0.59	0.57	0.55	0.48	0.45	0.45	0.45
EWT	0.93	0.92	0.78	0.77	0.73	0.64	0.58	0.56	0.41	0.24
CNV-TV	0.92	0.86	0.81	0.79	0.78	0.74	0.74	0.69	0.58	0.57

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ISSN: 1471-2105

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