Table 10 Alignment accuracy on the PhiX dataset with and without compression
From: QualComp: a new lossy compressor for quality scores based on rate distortion theory
|  |  |      Mismatches |  |  |  |  | |
|---|---|---|---|---|---|---|---|
bits/quality score | 0 | 1 | 2 | 3 | ≥ 4 | Unmapped | Size (MB) |
|  |  |        Original |  |  |  |  | |
2.95 | 11315113 | 1179411 | 237852 | 89385 | 141300 | 347707 (2.61%) | 468.096 |
|  |  |        1 Cluster |  |  |  |  | |
0 | 11315113 | 1178443 | 237493 | 67493 | 298 | 511928 (3.84%) | 0.097 |
0.20 | 11315113 | 1179059 | 237691 | 86662 | 90262 | 401981 (3.01%) | 32.097 |
0.50 | 11315113 | 1179153 | 237726 | 88051 | 100677 | 390048 (2.93%) | 80.097 |
1.00 | 11315113 | 1179233 | 237766 | 88771 | 109950 | 379935 (2.85%) | 159.097 |
2.00 | 11315113 | 1179304 | 237801 | 89177 | 120269 | 369104 (2.77%) | 318.097 |
2.50 | 11315113 | 1179318 | 237813 | 89250 | 123610 | 365664 (2.74%) | 397.097 |
|  |  |        3 Clusters |  |  |  |  | |
0 | 11315113 | 1179104 | 237763 | 79908 | 100618 | 398262 (2.99%) | 0.285 |
0.20 | 11315113 | 1179221 | 237793 | 86486 | 120835 | 371320 (2.78%) | 32.411 |
0.50 | 11315113 | 1179268 | 237799 | 87857 | 124371 | 366360 (2.75%) | 81.185 |
1.00 | 11315113 | 1179298 | 237816 | 88621 | 128182 | 361738 (2.71%) | 159.985 |
2.00 | 11315113 | 1179346 | 237827 | 89108 | 132675 | 356699 (2.67%) | 318.585 |
2.50 | 11315113 | 1179362 | 237835 | 89204 | 134221 | 355033 (2.66%) | 398.385 |
|  |  |       5 Clusters |  |  |  |  | |
0 | 11315113 | 1179057 | 237742 | 83060 | 110348 | 385448 (2.89%) | 0.476 |
0.20 | 11315113 | 1179239 | 237796 | 86437 | 121236 | 370947 (2.78%) | 32.551 |
0.50 | 11315113 | 1179283 | 237799 | 87858 | 124886 | 365829 (2.74%) | 80.606 |
1.00 | 11315113 | 1179321 | 237813 | 88664 | 128682 | 361175 (2.71%) | 160.376 |
2.00 | 11315113 | 1179363 | 237828 | 89146 | 133300 | 356018 (2.67%) | 319.270 |
2.50 | 11315113 | 1179364 | 237833 | 89230 | 134703 | 354525 (2.66%) | 400.176 |