A decision theory paradigm for evaluating identifier mapping and filtering methods using data integration

BMC Bioinformatics

Table 3 Probesets and ID pairs affirmed by selected ID filtering strategies

Probeset	Probesets accepted	ID pairs accepted	Estimate
accepted by…	(of 54613)	(of 887)¹	(P value²)
Affytag	68.4%	39.2%	−0.04 ( NS)
Masker	92.5%	95.9%	0.24 (3.5e-07)
PdbA30	66.4%	74.2%	0.21 (1.1e-07)
Jetset	35.2%	48.9%	0.16 (2.6e-10)

¹Pairs initially filtered as described above.
²Regression estimates are from a linear model predicting “+” group status with main effects only.

ISSN: 1471-2105