Table 1 Pfam clustering results
From: kClust: fast and sensitive clustering of large protein sequence databases
#Clusters | #Corrupted clusters | %Corrupted clusters | #Wrong seqs per | Time | |
|---|---|---|---|---|---|
corrupted cluster | |||||
BLAST | 118 920 | 5 | 4.2e-3 | 2.4 | 66 h 2 m ∗ |
kClust iter | 111 251 | 4 | 5.2e-3 | 4.0 | 28 m/1 h 47 m †|
kClust sens | 153 721 | 8 | 5.2e-3 | 1.6 | 17 m |
kClust 20 | 153 883 | 8 | 5.1e-3 | 1.6 | 16 m |
kClust 30 | 169 533 | 5 | 2.9e-3 | 1.6 | 16 m |
UCLUST 30 | 234 039 | 10 | 4.3e-3 | 1.0 | 2 m |
UCLUST 40 | 244 568 | 8 | 3.2e-3 | 1.0 | 2 m |
CD-HIT | 170 750 | 4 086 | 2.39 | 1.39 | 5 h 26 m |