Membrane protein orientation and refinement using a knowledge-based statistical potential

BMC Bioinformatics

Table 5 Decoy discrimination results

Target	Min TM-score	Max TM-score	Pearson’s r	Native model rank
1fftC	0.41	0.68	-0.43	23
1gzmA	0.51	0.69	-0.22	20
1ldiA	0.35	0.71	-0.29	59
1pw4A	0.39	0.69	-0.47	1
1xqfA	0.31	0.71	-0.54	1
2abmH	0.40	0.78	-0.06	2
2b2fA	0.35	0.77	-0.50	1
2d2cN	0.27	0.61	-0.41	28
2d57A	0.41	0.78	-0.38	1
2f2bA	0.38	0.75	-0.34	5
2feeB	0.23	0.63	-0.54	1
2nq2A	0.29	0.68	-0.20	2
2nr9A	0.47	0.67	-0.23	63
2occA	0.15	0.69	-0.63	1
2onkC	0.42	0.68	-0.27	26
2q7rA	0.20	0.50	-0.36	10
2qfiA	0.25	0.52	-0.25	182
2r6gG	0.35	0.62	-0.44	1
2witA	0.19	0.46	-0.49	1
2wswA	0.22	0.55	-0.48	1
2ydvA	0.56	0.73	-0.23	6
2z73A	0.50	0.68	-0.02	93
3b9wA	0.33	0.62	-0.43	2
3dhwA	0.43	0.64	-0.25	2
3mk7A	0.23	0.62	-0.48	8
3mktA	0.46	0.75	-0.01	142
3pjzA	0.32	0.68	-0.44	13
3qnqA	0.24	0.59	-0.17	22

Minimum and maximum TM-scores indicate the range of TM-scores amongst the 200 candidate models per target. PCC is the Pearson’s r correlation coefficient. Native rank is the ranking of the native structure homology model.

ISSN: 1471-2105