Skip to main content

Table 1 Parameter settings of simulated data

From: Large-scale multiple testing in genome-wide association studies via region-specific hidden Markov models

Region Transition matrix Stationary distribution z-value distribution z-value distribution
    (Null) (No-null)
1 0.98 0.02 0.20 0.80 (0.91, 0.09) N(0,1) 0.1N(1.0,1)+0.9N(3.0,1)
2 0.98 0.02 0.95 0.05 (0.98, 0.02) N(0,1) 0.8N(1.5,1)+0.2N(4.5,1)
3 0.98 0.02 0.45 0.55 (0.96, 0.04) N(0,1) 0.4N(1.5,1)+0.6N(3.5,1)
4 0.98 0.02 0.15 0.85 (0.88, 0.12) N(0,1) 0.2N(1.0,1)+0.8N(3.0,1)
5 0.98 0.02 0.15 0.85 (0.88, 0.12) N(0,1) 0.2N(1.0,1)+0.8N(3.0,1)