Skip to main content

Table 1 Parameter settings of simulated data

From: Large-scale multiple testing in genome-wide association studies via region-specific hidden Markov models

Region

Transition matrix

Stationary distribution

z-value distribution

z-value distribution

   

(Null)

(No-null)

1

0.98 0.02 0.20 0.80

(0.91, 0.09)

N(0,1)

0.1N(1.0,1)+0.9N(3.0,1)

2

0.98 0.02 0.95 0.05

(0.98, 0.02)

N(0,1)

0.8N(1.5,1)+0.2N(4.5,1)

3

0.98 0.02 0.45 0.55

(0.96, 0.04)

N(0,1)

0.4N(1.5,1)+0.6N(3.5,1)

4

0.98 0.02 0.15 0.85

(0.88, 0.12)

N(0,1)

0.2N(1.0,1)+0.8N(3.0,1)

5

0.98 0.02 0.15 0.85

(0.88, 0.12)

N(0,1)

0.2N(1.0,1)+0.8N(3.0,1)