DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures

BMC Bioinformatics

Table 2 Results obtained after running the GOSP-FIT for specific GO Ids and using different GO term semantic similarity approaches

			Number of proteins detected
GO ID	Level	GO name	GA	WA	ZA	RA	LA	LLA	p-value	Corrected p-value
GO:0044255	4	Cellular lipid metabolic process	154	1590	1907	225	1652	1286	0.00e+00	0.00e+00
GO:0071236	6	Cellular response to antibiotic	123	307	545	277	739	588	2.42e-14	9.68e-14
GO:0051409	3	Response to nitrosative stress	91	226	426	243	435	418	1.07e-14	4.26e-14
GO:0052099	6	Acquisition by symbiont of nutrients	47	128	463	2	418	269	2.75e-14	1.10e-13
		from host via siderophores

GO-universal (GA), Wang et al. (WA), Zhang et al. (ZA), Resnik (RA), Lin (LA) and Li et al. (LLA).

ISSN: 1471-2105