Table 1 Comparison of existing pattern recognition based bioimage classification tools with BIOCAT (as the writing of the paper)
Graphic user interface | 3D image | Classifier | Extensible algorithm plugin | ROI | Automatic comparison among algorithms | Required commercial software | Platform | |
|---|---|---|---|---|---|---|---|---|
Wndchrm [21] | No | No | Nearest Neighbor | No | No | No | None | Linux, MacOS, Windows |
CellProfiler [9] | Yes | No | Boosting | No | Yes | No | Matlab or None | Linux, MacOS, Windows |
ImageJ/Fiji (http://rsb.info.nih.gov/ij/) | Yes | Yes | No | Yes | Yes | No | None | All |
PSLID/SLIC (http://lanec1web1.compbio.cs.cmu.edu/release/) | No | Yes | BPNet, SVM | No | Yes | No | Matlab | Linux |
Ilastik [22] | Yes | Yes | Random Forest | No | Yes | No | None | Linux, MacOS, Windows |
Yes | Yes | Multiple Choices | Yes | Yes | Yes | None | All |