Table 1 Loading and simulation time in different simulation frameworks
From: Jimena: efficient computing and system state identification for genetic regulatory networks
Package | Calculation | Time (ms) |
|---|---|---|
Odefy | Network loading | 467(±2) |
Odefy | Network simulation | 583(±4) |
SQUAD | Network simulation | 467(±0.3) |
Jimena | Network loading | 3.7(±0.2) |
Jimena | Network simulation (time step: 0.1 s) | 3.1(±0.4) |
Jimena | Network simulation (time step: 0.01 s) | 28.2(±0.7) |