Table 4 Percentage of the NGS-reads experiments recovering certain number of global markers after feature selection for COV=0.05 and ρ =0 . 8
NGS-reads | Sample | <8 | 8 | 9 | 10 |
|---|---|---|---|---|---|
range | size | markers | markers | markers | markers |
n=60 | 99.02 | 0.80 | 0.18 | 0.00 | |
1K-50K | n=120 | 66.16 | 20.68 | 11.20 | 1.96 |
n=180 | 28.54 | 28.38 | 30.84 | 12.24 | |
n=60 | 71.61 | 17.10 | 9.28 | 2.01 | |
50K-100K (SAGE-tags) | n=120 | 12.85 | 20.14 | 36.80 | 30.21 |
n=180 | 2.30 | 7.43 | 28.67 | 61.60 | |
n=60 | 40.94 | 22.42 | 24.12 | 12.52 | |
250K-300K | n=120 | 5.52 | 9.46 | 28.58 | 56.44 |
n=180 | 0.70 | 1.86 | 14.14 | 83.30 | |
n=60 | 34.48 | 21.02 | 27.56 | 16.94 | |
500K-550K | n=120 | 4.84 | 8.16 | 24.20 | 62.80 |
n=180 | 0.78 | 2.16 | 11.38 | 85.68 | |
n=60 | 31.26 | 20.80 | 26.64 | 21.30 | |
5M-5M+50K | n=120 | 3.98 | 6.62 | 21.78 | 67.62 |
n=180 | 0.66 | 2.24 | 10.72 | 86.38 | |
n=60 | 30.04 | 20.86 | 26.84 | 22.26 | |
10M-10M+50K | n=120 | 3.54 | 7.24 | 22.06 | 67.16 |
n=180 | 0.88 | 1.44 | 9.72 | 87.96 | |
n=60 | 30.08 | 20.68 | 27.92 | 21.32 | |
15M-15M+50K | n=120 | 4.32 | 7.10 | 22.42 | 66.16 |
n=180 | 0.60 | 1.72 | 9.62 | 88.06 | |
n=60 | 30.86 | 19.92 | 27.00 | 22.22 | |
25M-25M+50K | n=120 | 3.56 | 7.46 | 21.90 | 67.08 |
n=180 | 0.58 | 1.90 | 8.90 | 88.62 | |
n=60 | 30.50 | 20.20 | 27.50 | 21.80 | |
32.5M-32.5M+50K | n=120 | 3.62 | 7.00 | 21.66 | 67.72 |
n=180 | 0.80 | 1.88 | 10.22 | 87.10 | |
n=60 | 31.14 | 18.40 | 28.14 | 22.32 | |
40M-40M+50K | n=120 | 3.90 | 7.12 | 22.44 | 66.54 |
n=180 | 0.60 | 1.90 | 10.12 | 87.38 | |
n=60 | 30.92 | 19.34 | 27.20 | 22.54 | |
50M-50M+50K | n=120 | 3.58 | 6.68 | 22.24 | 67.50 |
n=180 | 0.68 | 1.66 | 10.22 | 87.44 | |
n=60 | 30.74 | 19.00 | 27.92 | 22.34 | |
75M-75M+50K | n=120 | 3.68 | 7.64 | 23.46 | 65.22 |
n=180 | 0.50 | 1.90 | 10.44 | 87.16 | |
n=60 | 31.06 | 20.32 | 26.70 | 21.92 | |
100M-100M+50K | n=120 | 3.84 | 6.48 | 21.30 | 68.38 |
n=180 | 0.86 | 1.80 | 9.94 | 87.40 |