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Table 6 Correlation among annotation concepts

From: CoMAGC: a corpus with multi-faceted annotations of gene-cancer relations

(a) CGE - CCS (p<2.2e-16)

  

CCS

  

n- >c

c- >n

un.

CGE

inc.

318 (2.65)

45 (-4.22)

204 (-0.36)

dec.

79 (-3.95)

76 (6.30)

99 (0.54)

(b) IGE - CCS ( p <2 . 2 e -16)

  

CCS

 
  

n- >c

c- >n

 

IGE

up.

0 (-1.24)

2 (2.24)

 

unc.

212 (3.89)

0 (-7.04)

 

uni.

185 (-3.14)

119 (5.69)

 

(c) PT - CCS ( p <2 . 2 e -16)

  

CCS

 
  

n- >c

c- >n

 

PT

ob.

311 (2.41)

43 (-4.36)

 

cau.

86 (-3.54)

78 (6.41)

 

(d) PT - IGE ( p <2 . 2 e -16)

  

IGE

  

up.

unc.

uni.

PT

ob.

0 (-1.17)

191 (3.83)

163 (-3.10)

cau.

2 (1.72)

21 (-5.63)

141 (4.56)

  1. Pairwise contingency matrices of the annotation concepts are shown. The analyses of correlation were performed by the χ2 test. Numbers in the parentheses are Pearson residuals. The annotation concept values are abbreviated for brevity.
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BMC Bioinformatics

ISSN: 1471-2105

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