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Table 6 Tree generation and distance matrix computation time (seconds) for SUNPLIN-C++ using different randomly generated phylogenies

From: SUNPLIN: Simulation with Uncertainty for Phylogenetic Investigations

 

Tree expansion

Distance matrix

|T ℓ |

for |T ℓ |

for |T ℓ |+|S|

100

0.25

1.98

250

0.32

6.00

500

0.44

14.45

750

0.56

28.12

1,000

0.67

44.80

  1. Time in seconds for generating m = 1,000 expanded trees and to calculate distance matrices. The input trees contain |T ℓ | = (100, …, 1,000) species (randomly generated phylogenies) and each one is expanded with the insertion of |S| = 100 species.
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BMC Bioinformatics

ISSN: 1471-2105

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