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Table 7 Tree generation and distance matrix computation time (seconds) for SUNPLIN-C++ using a randomly generated phylogeny

From: SUNPLIN: Simulation with Uncertainty for Phylogenetic Investigations

 

Tree expansion

Distance matrix

m

for |T ℓ |=500

for |T ℓ |=500+|S|

1

0.01

0.02

10

0.02

0.15

100

0.06

1.43

1,000

0.44

14.45

10,000

4.27

144.27

  1. Time in seconds for generating a varying number m = (1, …,10,000) of expanded trees and to calculate distance matrices. The input tree contains |T ℓ | = 500 species (randomly generated phylogeny) and is expanded with the insertion of |S| = 100 species.
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BMC Bioinformatics

ISSN: 1471-2105

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