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Table 7 Tree generation and distance matrix computation time (seconds) for SUNPLIN-C++ using a randomly generated phylogeny

From: SUNPLIN: Simulation with Uncertainty for Phylogenetic Investigations

  Tree expansion Distance matrix
m for |T ℓ |=500 for |T ℓ |=500+|S|
1 0.01 0.02
10 0.02 0.15
100 0.06 1.43
1,000 0.44 14.45
10,000 4.27 144.27
  1. Time in seconds for generating a varying number m = (1, …,10,000) of expanded trees and to calculate distance matrices. The input tree contains |T ℓ | = 500 species (randomly generated phylogeny) and is expanded with the insertion of |S| = 100 species.
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BMC Bioinformatics

ISSN: 1471-2105

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