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Table 7 MAST results for the existence of predicted MEME motifs in substrate families

From: Transferring functional annotations of membrane transporters on the basis of sequence similarity and sequence motifs

  Ec- At Ec- Sc Sc- At
1e-20 1e-16 1e-12 1e-8 1e-4 1e-20 1e-16 1e-12 1e-8 1e-4 1e-20 1e-16 1e-12 1e-8 1e-4
Precision [%] 37.5 37.5 52.8 39.8 25.0 34.7 56.3 52.2 34.9 25.1 82.9 81.5 49.4 30.2 25.0
Recall [%] 37.5 37.5 73.2 48.7 44.2 41.7 81.5 85.5 50.4 40.3 96.7 93.0 79.7 39.3 31.7
F-measure[%] 37.5 37.5 61.3 43.8 30.1 37.9 58.5 60.2 40.9 29.4 87.7 85.9 58.8 30.3 27.3
Unclassified [%] 95.8 94.4 80.6 9.7 0.0 90.3 75.0 59.7 9.7 0.0 68.7 55.3 52.0 0.0 0.0
  1. MAST results searching for up to 3 motifs predicted by MEME in each substrate family from Sc and At. Most members of the substrate families were correctly classified for threshold (1e-4) but only with a very low accuracy.