Skip to main content

Table 2 Comparison of matrix reductions with empirical data using mare and simple predefined thresholds

From: Selecting informative subsets of sparse supermatrices increases the chance to find correct trees

Data Reduction Number of taxa Resolution score
Original Unreduced 70 91.0896
Without 6genome taxa Unreduced 64 82.1475
  mare -t 1.67 48 87.3778
mare with B Default 12 99.5556
  -t 3 13 100
  -t 4 20 94
  -t 6 22 95.8421
  -t 7 26 96.1739
  All taxa constraint 69 87.3485
mare with B Default 13 99.5
  -t 3 15 99.8333
  -t 4 21 95.0556
  -t 6 66 88.5238
  -t 7 67 88.4375
  All taxa constraint 69 85.803
Simple thresholdsof coverage Genes 0.4, taxa 0.4 22 92.5263
  Taxa 0.66, genes 0.66 26 82.2174
  Genes 0.4 59 90.1071
  Genes 0.66 57 80.8704