Figure 5

Estimated frequencies of the haplotypes detected for HIV-1 dataset. Frequencies of each of the best matched constructed haplotypes were estimated and plotted with the known frequencies of the sequenced variants. QuasQ (blue) and ShoRAH (red) constructed haplotypes are estimated with FreqEst while QuRe (green), ViSpA (yellow),ViSpA with ShoRAH corrected reads (pink), QuasiRecomb without recombination (turquoise) and Quasirecomb with recombination (orange) are estimated with their respective frequency estimators.