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Table 4 Summary of the mean F-measure for QuasQ, ShoRAH, QuRe and ViSpA (with ShoRAH corrected reads) over 50 runs across each of the eight scenarios as described in Table 2

From: Viral quasispecies inference from 454 pyrosequencing

 

F-measure (Mean)

Setting

QuasQ

ShoRAH

QuRe

ViSpA (Corr)

A

0.108

0.039

0.096

0.020

B

0.065

0.035

0.085

0.016

C

0.100

0.024

0.153

0.019

D

0.080

0.017

0.110

0.008

E

0.055

0.035

0.061

0.018

F

0.048

0.027

0.064

0.011

G

0.047

0.015

0.094

0.007

H

0.044

0.011

0.099

0.005

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BMC Bioinformatics

ISSN: 1471-2105

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