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Table 5 Summary of the recall rate, precision and F-measure for QuasQ, ShoRAH, QuRe, ViSpA, ViSpA (using ShoRAH corrected reads), QuasiRecomb (no recombination) and QuasiRecomb (with recombination) in reconstruction of the subtype B HIV-1 pol gene quasispecies

From: Viral quasispecies inference from 454 pyrosequencing

  Recall Precision F-measure
QuasQ 0.700 1.000 0.824
ShoRAH 0.900 0.153 0.261
QuRe 0.600 0.154 0.245
Vispa 0.600 0.005 0.010
Vispa (Corrected) 0.400 0.250 0.308
QuasiRecomb (No recomb) 0.500 0.004 0.008
QuasiRecomb (With recomb) 0.500 0.001 0.002