Table 7 Summary of the alignment result of the translated haplotypes of serotypes 1, 3 and 4 of the dengue virus obtained from lab cultures in Thailand constructed by QuasQ, ShoRAH, QuRe, ViSpA, ViSpA (with ShoRAH corrected reads), QuasiRecomb (no recombination) and QuasiRecomb (with recombination) with the translated reference genome
| Â | Serotype 1 | Serotype 3 | Serotype 4 |
|---|---|---|---|
QuasQ | 98.3% | 60.1% | 75.0% |
ShoRAH | 45.0% | 37.3% | 33.4% |
QuRe | 18.2% | 23.6% | 13.5% |
ViSpA | 3.0% | 3.1% | 3.1% |
ViSpA (Corr) | 96.3% | 40.5% | 71.0% |
QuasiRecomb (No recomb) | 98.3% | 60.3% | - |
QuasiRecomb (With recomb) | 98.3% | 60.3% | - |