Skip to main content

Table 7 Summary of the alignment result of the translated haplotypes of serotypes 1, 3 and 4 of the dengue virus obtained from lab cultures in Thailand constructed by QuasQ, ShoRAH, QuRe, ViSpA, ViSpA (with ShoRAH corrected reads), QuasiRecomb (no recombination) and QuasiRecomb (with recombination) with the translated reference genome

From: Viral quasispecies inference from 454 pyrosequencing

  Serotype 1 Serotype 3 Serotype 4
QuasQ 98.3% 60.1% 75.0%
ShoRAH 45.0% 37.3% 33.4%
QuRe 18.2% 23.6% 13.5%
ViSpA 3.0% 3.1% 3.1%
ViSpA (Corr) 96.3% 40.5% 71.0%
QuasiRecomb (No recomb) 98.3% 60.3% -
QuasiRecomb (With recomb) 98.3% 60.3% -
  1. The table gives the average percentage of the respective reference genome length with which the constructed haplotypes are aligned to.