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Table 1 Number of reads before and after adapter cleavage and reads mapped in each sncRNA library included in iMir

From: iMir: An integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq

MCF-7 cells   Raw reads Reads after adapter Cleavage miRNA reads tRNA reads rRNA reads mRNA reads piRNA reads Remaining reads mapping on the genome Reads not assigned
Exponentially growing Replicate 1 4,327,501 4,068,141 2,310,200 16,989 91,040 391,750 15,753 597,037 69,516
  Replicate 2 4,337,535 4,075,320 2,314,040 17,042 92,178 404,148 16,438 614,614 70,165
  Replicate 3 4,354,046 4,091,633 2,374,218 17,737 94,961 420,175 16,949 636,708 71,737
Growth-arrested Replicate 1 6,071,484 5,844,875 4,626,170 13,588 72,460 181,084 14,831 234,955 40,941
  Replicate 2 6,075,950 5,846,690 4,621,008 12,470 75,251 185,803 15,122 242,065 40,667
  Replicate 3 6,085,784 5,855,090 4,725,975 12,705 77,842 192,161 15,582 249,638 41,494
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