Table 1 Number of reads before and after adapter cleavage and reads mapped in each sncRNA library included in iMir
MCF-7 cells | Raw reads | Reads after adapter Cleavage | miRNA reads | tRNA reads | rRNA reads | mRNA reads | piRNA reads | Remaining reads mapping on the genome | Reads not assigned | |
|---|---|---|---|---|---|---|---|---|---|---|
Exponentially growing | Replicate 1 | 4,327,501 | 4,068,141 | 2,310,200 | 16,989 | 91,040 | 391,750 | 15,753 | 597,037 | 69,516 |
Replicate 2 | 4,337,535 | 4,075,320 | 2,314,040 | 17,042 | 92,178 | 404,148 | 16,438 | 614,614 | 70,165 | |
Replicate 3 | 4,354,046 | 4,091,633 | 2,374,218 | 17,737 | 94,961 | 420,175 | 16,949 | 636,708 | 71,737 | |
Growth-arrested | Replicate 1 | 6,071,484 | 5,844,875 | 4,626,170 | 13,588 | 72,460 | 181,084 | 14,831 | 234,955 | 40,941 |
Replicate 2 | 6,075,950 | 5,846,690 | 4,621,008 | 12,470 | 75,251 | 185,803 | 15,122 | 242,065 | 40,667 | |
Replicate 3 | 6,085,784 | 5,855,090 | 4,725,975 | 12,705 | 77,842 | 192,161 | 15,582 | 249,638 | 41,494 |