Table 5 Number of genes where differential expression was not detectable
Alignment, count, and test method | Number of genes not detectable |
|---|---|
STAR-countOverlaps exactTest | 0 |
tophat-countOverlaps exactTest | 0 |
STAR-htseq exactTest | 492 |
tophat-htseq exactTest | 506 |
RSEM-TPM exactTest | 21 |
RSEM-posteriorTPM exactTest | 0 |
RSEM-count exactTest | 19 |
RSEM-posteriorCount exactTest | 0 |