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Table 5 Number of genes where differential expression was not detectable

From: Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching

Alignment, count, and test method Number of genes not detectable
STAR-countOverlaps exactTest 0
tophat-countOverlaps exactTest 0
STAR-htseq exactTest 492
tophat-htseq exactTest 506
RSEM-TPM exactTest 21
RSEM-posteriorTPM exactTest 0
RSEM-count exactTest 19
RSEM-posteriorCount exactTest 0