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Table 8 UMLS benchmark sources, numbers, and examples

From: Discovery of novel biomarkers and phenotypes by semantic technologies

Term

Relationship

Object

Target

Conf%

#Docs

wenqing

BiomarkerFor

Obesity

Obesity

53.5

29

proteomic

BiomarkerFor

Obesity

Obesity

40.8

128

gene expression

BiomarkerFor

Obesity

Obesity

38.9

62

Mouse model

BiomarkerFor

Obesity

Obesity

19.8

17

muise

BiomarkerFor

Obesity

Obesity

17.5

20

athero-

BiomarkerFor

Obesity

Obesity

16.5

6

shrna

BiomarkerFor

Obesity

Obesity

9.6

4

inflammation

BiomarkerFor

Obesity

Obesity

8.2

4

TBD

BiomarkerFor

Obesity

Obesity

7.4

3

body weight

PhenoTypeOf

Diabetes

MGAT2

 

1

cell line

BiomarkerFor

Diabetes

MGAT2

 

1

  1. Examples of uninteresting novel InfoCodex biomarker/phenotype candidates from Merck internal research documents.