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Table 1 Summary of performance in HLA regions of NA18511 (1.8x) and NA10851 (5.6x)

From: A computational method for detecting copy number variations using scale-space filtering

Method NA18511 NA10851
  Detected region (Kbp) FPR(%) FNR(%) Detected region (Kbp) FPR(%) FNR(%)
  Min Max Gain loss    Min Max Gain Loss   
CNV_SS 5.9(100) 117(100) 21 307 4.03 16.31 10(100) 142(100) 0 378 5.13 8.99
CNV_shape 4.4(85) 117(100) 14 217 1.98 35.10 10(47.7) 142(44.6) 3 134 2.73 26.40
CNV-seq 16(51.9) 117(22.5) 77 46 0.04 72.93 10(57.2) 142(18.6) 46 77 1.57 68.47
CNV-seq (modified) 5.9(100) 117(85.1) 13 179 0.04 43.97 10(53.7) 142(55.7) 0 203 1.78 39.01