Table 1 Summary of performance in HLA regions of NA18511 (1.8x) and NA10851 (5.6x)
From: A computational method for detecting copy number variations using scale-space filtering
Method | NA18511 | NA10851 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Detected region (Kbp) | FPR(%) | FNR(%) | Detected region (Kbp) | FPR(%) | FNR(%) | |||||||
Min | Max | Gain | loss | Min | Max | Gain | Loss | |||||
CNV_SS | 5.9(100) | 117(100) | 21 | 307 | 4.03 | 16.31 | 10(100) | 142(100) | 0 | 378 | 5.13 | 8.99 |
CNV_shape | 4.4(85) | 117(100) | 14 | 217 | 1.98 | 35.10 | 10(47.7) | 142(44.6) | 3 | 134 | 2.73 | 26.40 |
CNV-seq | 16(51.9) | 117(22.5) | 77 | 46 | 0.04 | 72.93 | 10(57.2) | 142(18.6) | 46 | 77 | 1.57 | 68.47 |
CNV-seq (modified) | 5.9(100) | 117(85.1) | 13 | 179 | 0.04 | 43.97 | 10(53.7) | 142(55.7) | 0 | 203 | 1.78 | 39.01 |