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Table 1 Mean numbers of SNPs and prognostic SNPs included in fitted prediction models, recovery rate and means/standard deviations of the log-rank p-value from test sets for the proposed method and methods assuming recessive, dominant, or multiplicative models for all SNPs

From: Prediction of a time-to-event trait using genome wide SNP data

Censoring ρ Genetic Mean number Mean number of Recovery Mean (SD) p-value
   model of selected of selected rate of the log-rank
    SNPs prognostic SNPs   test
30% 0 Proposed 6.72 5.05 0.75 <0.0001 (<0.0001)
   Recessive 8.03 4.01 0.50 0.0052 (0.0018)
   Dominant 6.66 3.85 0.58 <0.0001 (<0.0001)
   Multiplicative 7.72 4.95 0.64 0.0004 (0.0003)
  0.3 Proposed 6.51 4.83 0.74 0.0001 (0.0001)
   Recessive 7.73 3.83 0.50 0.0045 (0.0016)
   Dominant 6.58 3.66 0.56 0.0011 (0.0007)
   Multiplicative 7.52 4.72 0.63 0.0006 (0.0004)
15% 0 Proposed 6.65 5.18 0.78 <0.0001 (<0.0001)
   Recessive 8.59 4.19 0.49 0.0028 (0.0011)
   Dominant 6.69 3.88 0.58 <0.0001 (<0.0001)
   Multiplicative 7.96 4.98 0.63 0.0005 (0.0005)
  0.3 Proposed 6.37 4.98 0.78 <0.0001 (<0.0001)
   Recessive 7.88 3.94 0.50 0.0048 (0.0028)
   Dominant 6.38 3.74 0.59 0.0011 (0.0011)
   Multiplicative 7.55 4.89 0.65 0.0001 (<0.0001)