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Table 3 List of 24 SNPs selected by the proposed method from the whole data set of 119 samples, their MaxTest p-values, genetic models, the number of times selected by prediction models fitted during the LOOCV procedure

From: Prediction of a time-to-event trait using genome wide SNP data

RS ID Chr Position Gene name Genetic P-value Frequency
     model g   
rs1030254 16 60696651 LOC644649, CDH8, LOC729159 3 0.00009 119
rs1030252 16 60696869 LOC644649, CDH8, LOC729159 2 0.00010 119
rs10798122 1 187584699 PLA2G4A, FAM5C 1 0.00048 119
rs10026207 4 186039201 HELT, SLC25A4 3 0.00233 119
rs13333329 16 1695776 CRAMP1L 3 0.00015 117
rs2132183 3 84966867 LOC440970,CADM2 3 0.00149 117
rs1950400 14 27105035 MIR4307,NOVA1 2 0.00040 115
rs2155777 11 133290007 OPCML 3 0.00142 113
rs1677914 12 78274425 NAV3 2 0.00283 106
rs1476847 18 9834599 RAB31 1 0.00029 102
rs7614596 3 84986027 LOC440970,CADM2 2 0.00020 100
rs2648117 4 186787096 SORBS2 3 0.00856 90
rs1851317 15 35077786 GJD2,ACTC1 1 0.00999 88
rs3790217 20 19441650 SLC24A3 2 0.00728 85
rs4902990 14 72618432 RGS6 2 0.00004 81
rs9482583 6 125318379 RNF217 3 0.00847 79
rs3020444 14 64791013 ESR2 3 0.00288 77
rs10851869 15 74331083 PML 2 0.00036 65
rs11986200 8 22698209 PEBP4 1 0.00222 63
rs11260756 1 16759616 SPATA21 1 0.00827 63
rs4968415 17 60264240 MED13,TBC1D3P2 1 0.00075 62
rs12416722 11 133300460 OPCML 1 0.00067 59
rs626266 12 72888187 TRHDE 2 0.00070 52
rs16852300 2 167414424 SCN7A,XIRP2 3 0.00513 33