Prediction of a time-to-event trait using genome wide SNP data

BMC Bioinformatics

Table 3 List of 24 SNPs selected by the proposed method from the whole data set of 119 samples, their MaxTest p-values, genetic models, the number of times selected by prediction models fitted during the LOOCV procedure

RS ID	Chr	Position	Gene name	Genetic	P-value	Frequency
				model g
rs1030254	16	60696651	LOC644649, CDH8, LOC729159	3	0.00009	119
rs1030252	16	60696869	LOC644649, CDH8, LOC729159	2	0.00010	119
rs10798122	1	187584699	PLA2G4A, FAM5C	1	0.00048	119
rs10026207	4	186039201	HELT, SLC25A4	3	0.00233	119
rs13333329	16	1695776	CRAMP1L	3	0.00015	117
rs2132183	3	84966867	LOC440970,CADM2	3	0.00149	117
rs1950400	14	27105035	MIR4307,NOVA1	2	0.00040	115
rs2155777	11	133290007	OPCML	3	0.00142	113
rs1677914	12	78274425	NAV3	2	0.00283	106
rs1476847	18	9834599	RAB31	1	0.00029	102
rs7614596	3	84986027	LOC440970,CADM2	2	0.00020	100
rs2648117	4	186787096	SORBS2	3	0.00856	90
rs1851317	15	35077786	GJD2,ACTC1	1	0.00999	88
rs3790217	20	19441650	SLC24A3	2	0.00728	85
rs4902990	14	72618432	RGS6	2	0.00004	81
rs9482583	6	125318379	RNF217	3	0.00847	79
rs3020444	14	64791013	ESR2	3	0.00288	77
rs10851869	15	74331083	PML	2	0.00036	65
rs11986200	8	22698209	PEBP4	1	0.00222	63
rs11260756	1	16759616	SPATA21	1	0.00827	63
rs4968415	17	60264240	MED13,TBC1D3P2	1	0.00075	62
rs12416722	11	133300460	OPCML	1	0.00067	59
rs626266	12	72888187	TRHDE	2	0.00070	52
rs16852300	2	167414424	SCN7A,XIRP2	3	0.00513	33

ISSN: 1471-2105