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Table 1 Total time for clustering of decoys

From: ClusCo: clustering and comparison of protein models

Program

Total time(min)

1thx_

2reb_2

spicker

435

10

4

durandal

140

9

0.9

calibur

859

64

1.2

Clusco 1CPU

426

32

1.8

Clusco 1CPU 1GPU

213

19

0.7

Clusco 2CPU

219

16

0.9

Clusco 2CPU 1GPU

146

12

0.4

Clusco 4CPU

131

11

0.5

Clusco 4CPU 1GPU

106

7

0.4

Clusco 23CPU

47

3

0.3

  1. 1thx_ - 32000 decoys of 108 aa. protein, 2reb_2 - 12500 decoys of 60 aa. protein. Need to note that spicker use maximum of 13500 decoys.
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BMC Bioinformatics

ISSN: 1471-2105

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