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Table 4 Alignment runtime comparison for one million reads

From: A hybrid short read mapping accelerator

 

4% error rate

6% error rate

8% error rate

GASSST

55 s

46 s

37 s

Align Core

1.6 s

1.47 s

1.31 s

Speedup

34

31.3

28

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BMC Bioinformatics

ISSN: 1471-2105

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