α
|
K
|
Q
| BDE(PS) | BDE() | BDE(SS) | PS-A | PS-M |
|
| SS-A | SS-M |
---|
6.0 | 16.000 | 200 | 8.54 | 7.74 | 12.47 | 174.61 | 180.14 | 172.89 | 179.06 | 171.26 | 182.21 |
8.0 | Â | Â | 3.80 | 2.93 | 3.04 | 174.75 | 175.00 | 174.38 | 174.72 | 174.17 | 175.14 |
9.0 | Â | Â | 2.35 | 2.36 | 2.45 | 174.99 | 174.96 | 174.82 | 175.38 | 174.71 | 175.52 |
10.0 | Â | Â | 2.69 | 2.65 | 2.64 | 174.64 | 174.98 | 174.41 | 175.56 | 174.35 | 175.70 |
11.0 | Â | Â | 3.49 | 3.93 | 3.99 | 175.66 | 175.72 | 175.61 | 175.89 | 175.64 | 176.01 |
12.0 | Â | Â | 3.65 | 2.91 | 2.86 | 174.50 | 174.29 | 174.57 | 174.51 | 174.53 | 174.64 |
13.0 | Â | Â | 2.86 | 2.59 | 2.60 | 175.48 | 174.79 | 175.45 | 174.79 | 175.40 | 174.93 |
- Pseudogenes data set. Log Bayes factor estimates for thendent model compared to the site-independent model using regular path sampling (PS; only using the last sample for each path step), path sampling using the mean of a collection of samples from each path step () and regular stepping-stone sampling (SS). Bidirectional checks, consisting of annealing (-A) and melting (-M) integrations, were performed for each log Bayes factor calculation, yielding a bidirectional error (BDE) for each estimator. α values indicate the shape of the sigmoid function used to construct a path between the two models. K indicates the number of path steps (or ratios for SS) used, while Q indicates the number of iterations to be performed per path step (or ratio for SS).