BMC Bioinformatics

Table 2 Specificity and Sensitivity for different selection thresholds across different locations

From: Mining for class-specific motifs in protein sequence classification

Subcellular location code	Specificity						Sensitivity
Subcellular location code	Selection threshold						Selection threshold
	5	6	7	8	9	10	5	6	7	8	9	10
CYT	0.974	0.98	0.979	0.983	0.985	0.985	0.865	0.895	0.888	0.907	0.921	0.912
CSK	0.997	0.998	0.997	0.998	0.998	0.998	0.73	0.771	0.769	0.801	0.826	0.822
END	0.985	0.988	0.987	0.989	0.99	0.99	0.93	0.95	0.951	0.962	0.97	0.97
EXC	0.973	0.979	0.979	0.982	0.985	0.985	0.899	0.924	0.923	0.939	0.949	0.95
GOL	0.996	0.997	0.996	0.997	0.997	0.997	0.983	0.996	0.994	0.998	0.999	0.998
LYS	0.998	0.998	0.998	0.999	0.999	0.999	0.987	0.993	0.987	0.993	0.997	0.988
MIT	0.982	0.985	0.984	0.987	0.988	0.988	0.877	0.898	0.879	0.895	0.906	0.900
NUC	0.977	0.981	0.98	0.984	0.986	0.986	0.749	0.807	0.806	0.844	0.871	0.871
PLA	0.961	0.97	0.968	0.974	0.978	0.977	0.878	0.897	0.893	0.908	0.919	0.919
POX	0.997	0.998	0.998	0.998	0.998	0.998	0.965	0.979	0.983	0.99	0.997	0.997

CYT - Cytoplasm; CSK - Cytoskeleton; END - Endoplasmic Reticulum; EXC - Extracellular/Secreted; GOL - Golgi; LYS - Lysosome; MIT - Mitochondria; NUC - Nuclear; PLA - Plasma membrane; POX - Perixosome.

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ISSN: 1471-2105

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