Skip to main content

Table 2 Results after train and test on the two different input coding schemes.

From: Accurate prediction of protein enzymatic class by N-to-1 Neural Networks

   MSA     MSA+SS   
  Spec Sens MCC FPR Spec Sens MCC FPR
Oxidoreductase 0.90 0.89 0.87 0.02 0.88 0.88 0.86 0.02
Transferase 0.90 0.89 0.84 0.05 0.90 0.87 0.82 0.06
Hydrolase 0.89 0.92 0.84 0.07 0.87 0.91 0.82 0.08
Lyase 0.91 0.84 0.87 0.00 0.89 0.82 0.85 0.01
Isomerase 0.81 0.72 0.76 0.01 0.84 0.69 0.76 0.00
Ligase 0.89 0.85 0.86 0.01 0.87 0.84 0.85 0.01
GC 0.86     0.84    
Q 0.96     0.96