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Table 2 System output.

From: A knowledge-based decision support system in bioinformatics: an application to protein complex extraction

System Output

Detect Defective Cliques + MCL Clustering

Cluster

Proteins

1

app1, swe1, hsl7

2

act1, srv2, bnr1, bni1, cof1, trm5, aip1

3

sla2, abp1, yor284w, rvs167, ysc84, sla1, ynl086w, ypl246c, rvs161, acf2, ybr108w, yjr083c, ygr268c, ypr171w, yhr133c

4

cap2, gic2

5

crn1, svl3

  1. The implemented workflow is composed by two algorithms in cascade: Detective Cliques (network preprocessing) and MCL (network clustering). The system running with standard parameters gives five protein complexes as result.
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BMC Bioinformatics

ISSN: 1471-2105

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