Skip to main content

Table 10 Characteristics of mined sequential patterns in GSE11342 (maxTC = variable, minSupp = 95% and minTSupp = 100%)

From: An efficient method for mining cross-timepoint gene regulation sequential patterns from time course gene expression datasets

  28d 31d 34d 37d 40d 43d 46d 49d 52d 55d 58d 61d 64d ≥ 67d
# of CTGR-SPs 112 112 120 126 157 165 160 163 163 161 194 194 220 242
# of longest CTGR-SPs 112 112 8 14 45 2 2 2 2 2 28 28 28 28
Maximal length of CTGR-SPs 1 1 3 3 3 4 4 4 4 4 4 4 4 4
# of genes in CTGR-SPs 112 112 119 123 132 132 132 132 132 132 136 135 136 140
# of genes in longest CTGR-SPs 0 0 4 6 14 2 2 2 2 2 3 3 3 3
# of gene pairs in lonest CTGR-SPs 0 0 7 11 42 4 4 4 4 4 21 21 21 21
-Log(p-value)†† - - 1.02 0.74 0.40 0 0 0 0 0 1.31 1.31 1.31 1.31
  1. d: # of days of SWS; ††: test longest CTGR-SPs-involved genes in immune response using GO enrichment analysis; -: no p-values.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us