An efficient method for mining cross-timepoint gene regulation sequential patterns from time course gene expression datasets

Table 14 Longest CTGR-SP s of GSE6377 (SWS = 3 days, maxTC = ∞ days, minSupp = 95% and minTSupp = 100%)

I₁	I₂	I₃	Supports
CAV1+ [21]	GNG7+	EIF2D+ [24]	100% (11/11)
		FTSJ2+	100% (11/11)
		NR2E1- [22]	100% (11/11)
		TMOD3- [25]	100% (11/11)
CCL20- [26]	KIF4A+ [27]	FTSJ2+	100% (11/11)
		TMOD3- [25]	100% (11/11)
CSF3R- [28]	GNG7+	CHST7+	100% (11/11)
		EIF2D+ [24]	100% (11/11)
		FTSJ2+	100% (11/11)
		NR2E1- [22]	100% (11/11)
		TMOD3- [25]	100% (11/11)
	KIF4A+ [27]	FTSJ2+	100% (11/11)
		NR2E1- [22]	100% (11/11)
		TMOD3- [25]	100% (11/11)
DGKQ+ [29]	GNG7+	FTSJ2+	100% (11/11)
NUDT4+ [30]	CDC25A+ [31]	NR2E1- [22]	100% (11/11)
	GNG7+	NR2E1- [22]	100% (11/11)
	KIF4A+ [27]	EIF2D+ [24]	100% (11/11)
		FTSJ2+	100% (11/11)
		NR2E1- [22]	100% (11/11)
		SOAT1- [32]	100% (11/11)
	TLR6- [33]	CORO1A+ [34]	100% (11/11)
		KAT2B- [35]	100% (11/11)
		NR2E1- [22]	100% (11/11)
		PLAGL1- [22]	100% (11/11)
NUDT4P1+	CDC25A+ [31]	NR2E1- [22]	100% (11/11)
	GNG7+	NR2E1- [22]	100% (11/11)
	KIF4A+ [27]	EIF2D+ [24]	100% (11/11)
		FTSJ2+	100% (11/11)
		NR2E1- [22]	100% (11/11)
		SOAT1- [32]	100% (11/11)
	TLR6- [33]	CORO1A+ [34]	100% (11/11)
		KAT2B- [35]	100% (11/11)
		NR2E1- [22]	100% (11/11)
		PLAGL1- [22]	100% (11/11)
STX4- [36]	CDC25A+ [31]	NR2E1- [22]	100% (11/11)
		TMOD3- [25]	100% (11/11)
	KIF4A+ [27]	EIF2D+ [24]	100% (11/11)
		FTSJ2+	100% (11/11)
		NR2E1- [22]	100% (11/11)
		TMOD3- [25]	100% (11/11)
	TLR6- [33]	CORO1A+ [34]	100% (11/11)
		KAT2B- [35]	100% (11/11)
		LSM7+ [37]	100% (11/11)
		NR2E1- [22]	100% (11/11)
		PLAGL1- [22]	100% (11/11)

[]: pneumonia-associated genes reported in previous literature; I_n: the nth item in a CTGR-SP; +: expressed genes; -: repressed genes.

ISSN: 1471-2105