Figure 11
From: Identifying conserved protein complexes between species by constructing interolog networks
Comparison between using Ensembl and OrthoMCL in constructing the interolog network. Ensembl [17] contains protein orthologs based on sequence similarity as well as domain information, while OrthoMCL [18] is predominantly based on sequence similarity. As we can see from the table, using domain information (through Ensembl) generates significantly more many-to-many ortholog mappings thereby enhancing our interolog construction.