Figure 6

Subtype-specific GISTIC landscapes of the Cho73 dataset. The three sub-plots correspond to GISTIC copy number landscapes of the three subtypes of the Cho73 dataset, respectively. A, Subtype A (WNT); B, Subtype B (SHH); C, Subtype C (NWS). In each subplot, the upper panel (red) corresponds to the recurrent copy number gains, while the lower panel (blue) corresponds to the recurrent copy losses. The numbers to left of each panel refer to the G-scores. The numbers to the right of each panel refer to the − log₁₀ q-values. The green lines refer to the q-value threshold of 0.25 (or − log₁₀ q = 0.602). The numbers (1 to 22) in-between the panels refer to the autosomes.