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Table 2 Abstract shapes of ncRNA families in R15

From: Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM

RNA Type

Shape Level 5

Shape Level 3

RNA Type

Shape Level 5

Shape Level 3

HDV _ribozyme

[A[B]]b[]a

[AA[B]]b[[[[[[]]]]]]aa

Alpha_RBS

[ABC]bac

[[[ABC]]]bac

Tombus_3_IV

[[]A][][]a

[[[]A]][][]a

Tymo_tRNA-like

[][][]A[a]

[][][[]]AA[aa]

Corona_FSE

[A]a

[AA]aa

Prion_pknot

[A]a

[A]a

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BMC Bioinformatics

ISSN: 1471-2105

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